Christopher Hogue's Research

Christopher W.V. Hogue, Ph.D. (Biochemistry)
 
Data Science,
Computational Biology/Bioinformatics,
Molecular Assembly, 
Structure and Evolution.

Updated 25 Oct 2014.


SOFTWARE
TraDES-2  Now Open Source. - email chogue {at} blueprint.org
featured at the
Protein Ensemble Database  http://pedb.vib.be/idpInfo.php

THESES
PDF Files attached at bottom of this page.
  • TraDES Related Work
    • Narendra Suhas Jogannathan (Ph.D. 2014)
      • Can Random Processes Create Robust Behaviour in Clathrin-Mediated Endocytosis? An in-silico Study of the Self-Assembly of Clathrin and Putative Roles For the Disordered Regions of Epsin and Eps15.
      • PDF file -scroll down -140330_Narendra_Suhas_Jagannathan_Thesis.pdf
    • Arun Chandramohan (Ph.D. 2014)
      • Structural Insights Into Folded, Unfolded and Nascent Protein States using Ensemble Sampling and Cluster Expansion
      • PDF file -scroll down -140818_Arun_Chandramohan_Thesis.pdf

    • Zhao Chen (Ph.D. 2014)
      • Conformational Transition of Formin Disordered Region upon Profilin Binding.
      • PDF file -scroll down -140714_ZhaoChen_Thesis.pdf

    • Liu Chengcheng (Ph.D. 2013)
      • New Methods to Study Proline-Rich Disordered Regions and their Structural Ensembles in Protein Signaling Pathways.
      • PDF file - scroll down - 121201_LiuC_Thesis_Final.pdf

    • Xiang Wen Wei (MSc. 2013)
      • Simulation of Auto-Inhibition Effect in Measles Virus NTail Protein with its Binding Partner XD.
      • PDF file - scroll down - 130222_Wenwei_Msc_Thesis_Complete.pdf
  • Molecular Assembly, Complexity and Evolution

    • Zhang Bo (Ph.D. 2013)
      • Towards a Consistent Chronology To Explain the Evolution of the Ribosome.
      • PDF file - scroll down - 130103_Zhang Bo_Thesis_Complete.pdf

    • Asfa Alli Shaik (Ph.D. 2013)
      • The Unique Phylogenetic Distribution of Vault Particles Reveals its Functional Roles.
        PDF file - scroll down - 130330_Asfa_Thesis_Complete_cwvh.pdf


      Clathrin Assembly Simulations: Narendra Suhas Jogannathan

      Clathrin Assembly Simulations ‎(2014)‎

       



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      LINKS
      • Intrinsic Disorder NMR/3D Structure Software
      • Links We Frequently Use
      • NCBI - National Center for Biotechnology Information
      • EBI - European Bioinformatics Institute
      • PDB - Protein Structure Database
      • NUS-BIC- Local Bioinformatics Center & Asian FTP Mirror
      • The Global Proteome Machine Organization TheGPM
      • Cytoscape
      • Canadian Bioinformatics Workshop
       
       
       
       
       
       
       
       
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      Christopher Hogue,
      Oct 23, 2014, 2:50 PM
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      Christopher Hogue,
      Oct 23, 2014, 2:50 PM
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      Christopher Hogue,
      Mar 30, 2013, 7:26 PM
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      Christopher Hogue,
      Mar 30, 2013, 6:45 PM
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      Christopher Hogue,
      Mar 30, 2013, 6:39 PM
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      Christopher Hogue,
      Mar 30, 2013, 6:36 PM
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      Christopher Hogue,
      Oct 23, 2014, 1:38 PM
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      Christopher Hogue,
      Oct 23, 2014, 1:38 PM
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      Christopher Hogue,
      Oct 23, 2014, 1:39 PM
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