Object Manager Learning Tasks Starting pointTo jump-start your first project utilizing the C++ Object Manager in the C++ Toolkit framework, we suggest using the new_project shell script, which creates a sample application and a makefile: 1. Create a new project called task in the folder task using the new_project shell script (this will create the folder, the source file and the makefile): new_project task app/objmgr 2. Build the sample project and run the application: cd task 3. Now you can go ahead and convert the sample code in the task.cpp into the code that performs your learning task. Here a list of teaching examples to help you start working with the C++ Object Manager. The main idea here is to build one task on the top of another, in growing level of complexity:
Use the teaching example sequence:
The application should produce the following results for the above Bioseq: ID: emb|AJ438945.1|HSA438945 + gi|19584253
Homo sapiens SLC16A1 gene for monocarboxylate transporter isoform 1, exons 2-5 Sequence length: 17312 Sequence map: Segment: pos=0, length=17312, type=DATA Total: 40.29% cdr0: 46.4405% Cdreg: 46.4405% Non-Cdreg: 39.7052% See here for more tasks and example sequences: http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=toolkit&part=ch_objmgr#ch_objmgr.om_tasks.html |
Christopher Hogue's Research > RCE in Mechanobiology Advanced Bioinformatics Software Development Workshop >