Starting point

To jump-start your first project utilizing the C++ Object Manager in the C++ Toolkit framework, we suggest using the new_project shell script, which creates a sample application and a makefile:

1. Create a new project called task in the folder task using the new_project shell script (this will create the folder, the source file and the makefile):

new_project task app/objmgr

2. Build the sample project and run the application:

cd task
make -f Makefile.task_app
./task -gi 333

The output should look like this:
First ID: emb|CAA23443.1|
Sequence: length=263, data=MARFLGLCTW
# of descriptions: 6
# of features:
[whole] Any: 2
[whole] Genes: 0
[0..9] Any: 2
[0..999, TSE] Any: 1
# of alignments:
[whole] Any: 0
Done

3. Now you can go ahead and convert the sample code in the task.cpp into the code that performs your learning task. Here a list of teaching examples to help you start working with the C++ Object Manager. The main idea here is to build one task on the top of another, in growing level of complexity:

• having a Seq-id (GI), get the Bioseq;
• print the Bioseq's title descriptor;
• print the Bioseq's length;

Use the teaching example sequence:

The application should produce the following results for the above Bioseq: